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Creators/Authors contains: "Thompson, David R"

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  1. Wildfires, which are a natural part of the boreal ecosystem in Alaska, have recently increased in frequency and size. Environmental conditions (high temperature, low precipitation, and frequent lightning events) are becoming favorable for severe fire events. Fire releases greenhouse gasses such as carbon dioxide into the environment, creating a positive feedback loop for warming. Needleleaf species are the dominant vegetation in boreal Alaska and are highly flammable. They burn much faster due to the presence of resin, and their low-lying canopy structure facilitates the spread of fire from the ground to the canopy. Knowing the needleleaf vegetation distribution is crucial for better forest and wildfire management practices. Our study focuses on needleleaf fraction mapping using a well-documented spectral unmixing approach: multiple endmember spectral mixture analysis (MESMA). We used an AVIRIS-NG image (5 m), upscaled it to 10 m and 30 m spatial resolutions, and applied MESMA to all three images to assess the impact of spatial resolution on sub-pixel needleleaf fraction estimates. We tested a novel method to validate the fraction maps using field data and a high-resolution classified hyperspectral image. Our validation method produced needleleaf cover fraction estimates with accuracies of 73%, 79%, and 78% for 5 m, 10 m, and 30 m image data, respectively. To determine whether these accuracies varied significantly across different spatial scales, we used the McNemar statistical test and found no significant differences between the accuracies. The findings of this study enhance the toolset available to fire managers to manage wildfire and for understanding changes in forest demography in the boreal region of Alaska across the high-to-moderate resolution scale. 
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  2. Imaging spectroscopy is a burgeoning tool for understanding ecosystem functioning on large spatial scales, yet the application of this technology to assess intra-specific trait variation across environmental gradients has been poorly tested. Selection of specific genotypes via environmental filtering plays an important role in driving trait variation and thus functional diversity across space and time, but the relative contributions of intra-specific trait variation and species turnover are still unclear. To address this issue, we quantified the variation in reflectance spectra within and between six uniform stands of Metrosideros polymorpha across elevation and soil substrate age gradients on Hawai‘i Island. Airborne imaging spectroscopy and light detection and ranging (LiDAR) data were merged to capture and isolate sunlit portions of canopies at the six M. polymorpha-dominated sites. Both intra-site and inter-site spectral variations were quantified using several analyses. A support vector machine (SVM) model revealed that each site was spectrally distinct, while Euclidean distances between site centroids in principal components (PC) space indicated that elevation and soil substrate age drive the separation of canopy spectra between sites. Coefficients of variation among spectra, as well as the intrinsic spectral dimensionality of the data, demonstrated the hierarchical effect of soil substrate age, followed by elevation, in determining intra-site variation. Assessments based on leaf trait data estimated from canopy reflectance resulted in similar patterns of separation among sites in the PC space and distinction among sites in the SVM model. Using a highly polymorphic species, we demonstrated that canopy reflectance follows known ecological principles of community turnover and thus how spectral remote sensing addresses forest community assembly on large spatial scales. 
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  3. The massive surge in the amount of observational field data demands richer and more meaningful collab-oration between data scientists and geoscientists. This document was written by members of the Working Group on Case Studies of the NSF-funded RCN on Intelli-gent Systems Research To Support Geosciences (IS-GEO, https:// is-geo.org/ ) to describe our vision to build and enhance such collaboration through the use of specially-designed benchmark datasets. Benchmark datasets serve as summary descriptions of problem areas, providing a simple interface between disciplines without requiring extensive background knowledge. Benchmark data intend to address a number of overarching goals. First, they are concrete, identifiable, and public, which results in a natural coordination of research efforts across multiple disciplines and institutions. Second, they provide multi-fold opportunities for objective comparison of various algorithms in terms of computational costs, accuracy, utility and other measurable standards, to address a particular question in geoscience. Third, as materials for education, the benchmark data cultivate future human capital and interest in geoscience problems and data science methods. Finally, a concerted effort to produce and publish benchmarks has the potential to spur the development of new data science methods, while provid-ing deeper insights into many fundamental problems in modern geosciences. That is, similarly to the critical role the genomic and molecular biology data archives serve in facilitating the field of bioinformatics, we expect that the proposed geosciences data repository will serve as “catalysts” for the new discicpline of geoinformatics. We describe specifications of a high quality geoscience bench-mark dataset and discuss some of our first benchmark efforts. We invite the Climate Informatics community to join us in creating additional benchmarks that aim to address important climate science problems. 
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  4. Abstract Observing the environment in the vast regions of Earth through remote sensing platforms provides the tools to measure ecological dynamics. The Arctic tundra biome, one of the largest inaccessible terrestrial biomes on Earth, requires remote sensing across multiple spatial and temporal scales, from towers to satellites, particularly those equipped for imaging spectroscopy (IS). We describe a rationale for using IS derived from advances in our understanding of Arctic tundra vegetation communities and their interaction with the environment. To best leverage ongoing and forthcoming IS resources, including National Aeronautics and Space Administration’s Surface Biology and Geology mission, we identify a series of opportunities and challenges based on intrinsic spectral dimensionality analysis and a review of current data and literature that illustrates the unique attributes of the Arctic tundra biome. These opportunities and challenges include thematic vegetation mapping, complicated by low‐stature plants and very fine‐scale surface composition heterogeneity; development of scalable algorithms for retrieval of canopy and leaf traits; nuanced variation in vegetation growth and composition that complicates detection of long‐term trends; and rapid phenological changes across brief growing seasons that may go undetected due to low revisit frequency or be obscured by snow cover and clouds. We recommend improvements to future field campaigns and satellite missions, advocating for research that combines multi‐scale spectroscopy, from lab studies to satellites that enable frequent and continuous long‐term monitoring, to inform statistical and biophysical approaches to model vegetation dynamics. 
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